A mechanical issue is believed to have caused the E-11A to crash.
The flight data recorder from the U.S. Bombardier E-11A was also recovered from the site, according to a statement from U.S. Forces Afghanistan.
A mechanical issue is believed to have caused the E-11A to crash on Monday in Ghazni province, a defense official said. A second official told ABC News that the pilots had declared an in-flight emergency.
The statement released on Tuesday reiterated that there were no indications that the crash was caused by enemy fire.
U.S. military personnel destroyed the remnants of the aircraft.
Several factors delayed Tuesday’s recovery of the bodies, including weather conditions and security precautions that were taken in order to reach the location of the crash, which is in a Taliban stronghold south of Kabul, one defense official said. Afghan forces secured the area, allowing the U.S. military to conduct the recovery operations, the official added.
The Pentagon has not yet identified the two individuals killed in the crash.
In the aftermath of the crash, the Taliban said they had shot down the aircraft — a claim rebutted by spokesperson Col. Sonny Leggett in a statement on Monday. He also called Taliban claims that additional aircraft had crashed “false.”
Two 82nd Airborne Division paratroopers were killed by an improvised explosive device, or IED, while conducting combat operations in Kandahar province, Afghanistan on Jan. 11. They were later identified as Staff Sgt. Ian Paul McLaughlin of Newport News, Virginia, and Pfc. Miguel Angel Villalon of Joliet, Illinois.
ABC News’ James Meek and Abby Cruz contributed to this report.